Function reference • ReductionWrappers

All functions
`DoForceAtlas2()`	DoForceAtlas2
`DoPHATE()`	DoPHATE
`DoPaCMAP()`	DoPaCMAP
`DoPhenoGraph()`	DoPhenoGraph
`DoUMAP()`	DoUMAP
`DoopenTSNE()`	DoopenTSNE
`DooptSNE()`	DooptSNE
`PAGA()`	PAGA
`PAGAplot()`	PAGAplot
`PushData()`	PushData
`ReductionBridge()`	ReductionBridge
`fa2()`	ForceAtlas2 An R wrapper around the Python implementation of ForceAtlas2 found at https://github.com/bhargavchippada/forceatlas2 Currently a very restricted version
`openTSNE()`	openTSNE An R wrapper for the openTSNE Python module found at https://github.com/pavlin-policar/openTSNE/
`pacmap()`	pacmap
`phate()`	phate An R wrapper around the PHATE Python module found at https://github.com/KrishnaswamyLab/PHATE Potential of Heat-diffusion for Affinity-based Trajectory Embedding (PHATE) embeds high dimensional single-cell data into two or three dimensions for visualization of biological progressions as described in Moon et al, 2017
`phenograph()`	Phenograph Used to cluster high dimensional data. An R wrapper around the Python Phenograph module found at https://github.com/jacoblevine/PhenoGraph
`umap()`	umap An R wrapper around the UMAP Python module found at https://github.com/lmcinnes/umap Uniform Manifold Approximation and Projection Finds a low dimensional embedding of the data that approximates an underlying manifold.

Reference