DoPaCMAP

Perform PaCMAP projection on a Seurat object using the pacmap library

DoPaCMAP(object, assay_use = "RNA", reduction_save = "PAC", ...)

Arguments

object

A Seurat or SingleCellExperiment object to be transformed.

assay_use

Assay on which to perform dimensional reduction

reduction_save

Name to use for the reduction (i. e. tsne, umap, etc...). Default: PAC

...

Extra parameters to pass to the PaCMAP function.